Hepatitis B virus (HBV) exists as 9 major genotypes and multiple subtypes， many of which exhibit differences in pathogenicity and treatment response. Genotype H identified in Central America is associated with low incidence of liver disease and HCC， but higher incidence of occult HBV (low level HBV DNA positivity， HBsAg negative). The replication phenotype of genotype H associated with less severe forms of liver disease is unknown. We hypothesized that the reduced pathogenesis associated with this genotype may be due to by lower rates of viral replication and/or secretion compared to other characterised strains. We used transient transfection and infection cell culture models to characterise the replication phenotype， compared to our D3 reference strain. Genotype H exhibited reduced viral replication and altered envelope protein expression compared to genotype D， with functional studies showing that low replication was in part likely due to sequence differences in the major transcriptional regulatory region.