A capillary electrophoretic (CE) method using a short-sweep approach and laser-induced fluorescence (LIF) detection (ShortSweepCE-LIF) was developed for determination of Zn and Cd as complexes with highly selective and sensitive fluorescent probe FluoZin-3. The ShortSweepCE-LIF method， established in this work， can be used for examining competitive Zn and Cd binding properties of metalloproteins or peptides. The parameters including background electrolyte composition， injection pressure and time as well as separation voltage were investigated. Under the optimized conditions， 80 mM HEPES， pH 7.4， with 1.5 μM FluoZin-3 was used as an electrolyte， hydrodynamic injection was performed at 50 mbar for 5 s， and separation voltage of 25 kV. Limits of detection for Zn and Cd were 4 and 125 nM， respectively. The developed method was demonstrated in a study of interactions between metalothionein-2a isoform and metal ions Zn， Co and Cd. It was found that FluoZin-3 was able to extract a single Zn ion， while added Co (in surplus) extracted only 2.4 Zn ions， and Cd extracted all 7 Zn ions present in the metalothionein molecule.